J4_8G34_008

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G34_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0576

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8G34|1|B|A|1772
8G34|1|B|A|1773
8G34|1|B|C|1774
8G34|1|B|U|1775
8G34|1|B|G|1776
*
8G34|1|B|C|1788
8G34|1|B|A|1789
8G34|1|B|C|1790
8G34|1|B|A|1791
8G34|1|B|G|1792
*
8G34|1|B|U|1827
8G34|1|B|G|1828
8G34|1|B|A|1829
8G34|1|B|C|1830
*
8G34|1|B|G|1975
8G34|1|B|U|1976
8G34|1|B|A|1977
8G34|1|B|A|1978
8G34|1|B|U|1979

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA