3D structure

PDB id
8G38 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8G38_008 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0701
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8G38|1|B|A|1772
8G38|1|B|A|1773
8G38|1|B|C|1774
8G38|1|B|U|1775
8G38|1|B|G|1776
*
8G38|1|B|C|1788
8G38|1|B|A|1789
8G38|1|B|C|1790
8G38|1|B|A|1791
8G38|1|B|G|1792
*
8G38|1|B|U|1827
8G38|1|B|G|1828
8G38|1|B|A|1829
8G38|1|B|C|1830
*
8G38|1|B|G|1975
8G38|1|B|U|1976
8G38|1|B|A|1977
8G38|1|B|A|1978
8G38|1|B|U|1979

Current chains

Chain B
23S

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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