J4_8G38_009

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8G38|1|B|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G38_009 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1077

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8G38|1|B|C|2285
8G38|1|B|G|2286
8G38|1|B|A|2287
8G38|1|B|A|2288
8G38|1|B|G|2289
*
8G38|1|B|U|2343
8G38|1|B|U|2344
8G38|1|B|G|2345
8G38|1|B|A|2346
8G38|1|B|C|2347
*
8G38|1|B|G|2370
8G38|1|B|G|2371
8G38|1|B|U|2372
*
8G38|1|B|A|2381
8G38|1|B|G|2382
8G38|1|B|G|2383

Current chains

Chain B

23S

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27