J4_8G4S_001
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CAGGACAAC*GGG*CUGGC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8G4S|1|2|C|91, 8G4S|1|2|G|271
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8G4S_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.3597
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8G4S|1|2|C|86
8G4S|1|2|A|87
8G4S|1|2|G|88
8G4S|1|2|G|89
8G4S|1|2|A|90
8G4S|1|2|C|91
8G4S|1|2|A|92
8G4S|1|2|A|93
8G4S|1|2|C|94
*
8G4S|1|2|G|221
8G4S|1|2|G|222
8G4S|1|2|G|223
*
8G4S|1|2|C|269
8G4S|1|2|U|270
8G4S|1|2|G|271
8G4S|1|2|G|272
8G4S|1|2|C|273
*
8G4S|1|2|G|295
8G4S|1|2|G|296
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S8
- Chain L
- SSU ribosomal protein S17P
- Chain X
- SSU ribosomal protein S12P
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