J4_8G6Y_010

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G6Y_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0419

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8G6Y|1|a|A|1772
8G6Y|1|a|A|1773
8G6Y|1|a|C|1774
8G6Y|1|a|U|1775
8G6Y|1|a|G|1776
*
8G6Y|1|a|C|1788
8G6Y|1|a|A|1789
8G6Y|1|a|C|1790
8G6Y|1|a|A|1791
8G6Y|1|a|G|1792
*
8G6Y|1|a|U|1827
8G6Y|1|a|G|1828
8G6Y|1|a|A|1829
8G6Y|1|a|C|1830
*
8G6Y|1|a|G|1975
8G6Y|1|a|U|1976
8G6Y|1|a|A|1977
8G6Y|1|a|A|1978
8G6Y|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2