J4_8G7Q_008

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7Q_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0898

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8G7Q|1|A|A|1772
8G7Q|1|A|A|1773
8G7Q|1|A|C|1774
8G7Q|1|A|U|1775
8G7Q|1|A|G|1776
*
8G7Q|1|A|C|1788
8G7Q|1|A|A|1789
8G7Q|1|A|C|1790
8G7Q|1|A|A|1791
8G7Q|1|A|G|1792
*
8G7Q|1|A|U|1827
8G7Q|1|A|G|1828
8G7Q|1|A|A|1829
8G7Q|1|A|C|1830
*
8G7Q|1|A|G|1975
8G7Q|1|A|U|1976
8G7Q|1|A|A|1977
8G7Q|1|A|A|1978
8G7Q|1|A|U|1979

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2