J4_8G7S_008

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7S_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0809

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8G7S|1|A|A|1772
8G7S|1|A|A|1773
8G7S|1|A|C|1774
8G7S|1|A|U|1775
8G7S|1|A|G|1776
*
8G7S|1|A|C|1788
8G7S|1|A|A|1789
8G7S|1|A|C|1790
8G7S|1|A|A|1791
8G7S|1|A|G|1792
*
8G7S|1|A|U|1827
8G7S|1|A|G|1828
8G7S|1|A|A|1829
8G7S|1|A|C|1830
*
8G7S|1|A|G|1975
8G7S|1|A|U|1976
8G7S|1|A|A|1977
8G7S|1|A|A|1978
8G7S|1|A|U|1979

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA