J4_8HFR_003
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8HFR|1|1e|A|1452, 8HFR|1|1e|U|1455, 8HFR|1|1e|A|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8HFR_003 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.1014
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|C|1451
8HFR|1|1e|A|1452
8HFR|1|1e|A|1453
8HFR|1|1e|A|1454
8HFR|1|1e|U|1455
8HFR|1|1e|A|1456
8HFR|1|1e|U|1457
*
8HFR|1|1e|A|1475
8HFR|1|1e|G|1476
*
8HFR|1|1e|U|1877
8HFR|1|1e|G|1878
8HFR|1|1e|A|1879
8HFR|1|1e|U|1880
*
8HFR|1|1e|A|2352
8HFR|1|1e|G|2353
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain Pv
- 60S ribosomal protein L17-A
- Chain RP
- 60S ribosomal protein L19-A
- Chain dG
- 60S ribosomal protein L31-A
- Chain rA
- Nucleolar GTP-binding protein 1
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