J4_8HFR_004
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8HFR|1|1e|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8HFR_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0897
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8HFR|1|1e|G|1492
8HFR|1|1e|G|1493
8HFR|1|1e|U|1494
8HFR|1|1e|U|1495
8HFR|1|1e|C|1496
*
8HFR|1|1e|G|1520
8HFR|1|1e|G|1521
8HFR|1|1e|U|1522
8HFR|1|1e|U|1523
8HFR|1|1e|A|1524
8HFR|1|1e|G|1525
*
8HFR|1|1e|C|1614
8HFR|1|1e|C|1615
*
8HFR|1|1e|G|1829
8HFR|1|1e|G|1830
8HFR|1|1e|U|1831
8HFR|1|1e|C|1832
8HFR|1|1e|G|1833
8HFR|1|1e|U|1834
8HFR|1|1e|A|1835
8HFR|1|1e|C|1836
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 3n
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain RP
- 60S ribosomal protein L19-A
- Chain Xc
- 60S ribosomal protein L25
- Chain g2
- 60S ribosomal protein L34-A
- Chain jh
- 60S ribosomal protein L37-A
- Chain kr
- 60S ribosomal protein L38
- Chain li
- 60S ribosomal protein L39
- Chain rA
- Nucleolar GTP-binding protein 1
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