J4_8HFR_008
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8HFR_008 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.1123
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_37757.2
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8HFR|1|1e|U|3010
8HFR|1|1e|A|3011
8HFR|1|1e|A|3012
*
8HFR|1|1e|U|3042
8HFR|1|1e|C|3043
*
8HFR|1|1e|G|3098
8HFR|1|1e|C|3099
8HFR|1|1e|U|3100
*
8HFR|1|1e|A|3134
8HFR|1|1e|U|3135
8HFR|1|1e|G|3136
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L3
- Chain O6
- 60S ribosomal protein L16-A
- Chain V5
- 60S ribosomal protein L23-A
- Chain zp
- UPF0642 protein YBL028C
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