J4_8HL2_006

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUUU*AGUUAG*CC*GACCGUAC

Length

21 nucleotides

Bulged bases

8HL2|1|A23S|U|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HL2_006 not in the Motif Atlas

Homologous match to J4_4V9F_004

Geometric discrepancy: 0.2357

The information below is about J4_4V9F_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8HL2|1|A23S|G|1454
8HL2|1|A23S|G|1455
8HL2|1|A23S|U|1456
8HL2|1|A23S|U|1457
8HL2|1|A23S|U|1458
*
8HL2|1|A23S|A|1482
8HL2|1|A23S|G|1483
8HL2|1|A23S|U|1484
8HL2|1|A23S|U|1485
8HL2|1|A23S|A|1486
8HL2|1|A23S|G|1487
*
8HL2|1|A23S|C|1550
8HL2|1|A23S|C|1551
*
8HL2|1|A23S|G|1751
8HL2|1|A23S|A|1752
8HL2|1|A23S|C|1753
8HL2|1|A23S|C|1754
8HL2|1|A23S|G|1755
8HL2|1|A23S|U|1756
8HL2|1|A23S|A|1757
8HL2|1|A23S|C|1758

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L23P

50S ribosomal protein L23

Chain L29P

50S ribosomal protein L29

Chain L34E

50S ribosomal protein L34e

Chain L37E

50S ribosomal protein L37e

Chain L39E

50S ribosomal protein L39e