J4_8HL2_009

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACUG*CAUAG*UAAAU*AUCAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HL2_009 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.3217

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8HL2|1|A23S|G|1916
8HL2|1|A23S|A|1917
8HL2|1|A23S|C|1918
8HL2|1|A23S|U|1919
8HL2|1|A23S|G|1920
*
8HL2|1|A23S|C|1932
8HL2|1|A23S|A|1933
8HL2|1|A23S|U|1934
8HL2|1|A23S|A|1935
8HL2|1|A23S|G|1936
*
8HL2|1|A23S|U|1971
8HL2|1|A23S|A|1972
8HL2|1|A23S|A|1973
8HL2|1|A23S|A|1974
8HL2|1|A23S|U|1975
*
8HL2|1|A23S|A|2103
8HL2|1|A23S|U|2104
8HL2|1|A23S|C|2105
8HL2|1|A23S|A|2106
8HL2|1|A23S|A|2107
8HL2|1|A23S|C|2108

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL2P

50S ribosomal protein L2

Chain L37A

50S ribosomal protein L37Ae