J4_8HL4_005

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CAGCGAAG*UC*GUCUG*CG

Length

17 nucleotides

Bulged bases

8HL4|1|A23S|G|1417, 8HL4|1|A23S|A|1418, 8HL4|1|A23S|A|1419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HL4_005 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.349

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8HL4|1|A23S|C|1413
8HL4|1|A23S|A|1414
8HL4|1|A23S|G|1415
8HL4|1|A23S|C|1416
8HL4|1|A23S|G|1417
8HL4|1|A23S|A|1418
8HL4|1|A23S|A|1419
8HL4|1|A23S|G|1420
*
8HL4|1|A23S|U|1438
8HL4|1|A23S|C|1439
*
8HL4|1|A23S|G|1800
8HL4|1|A23S|U|1801
8HL4|1|A23S|C|1802
8HL4|1|A23S|U|1803
8HL4|1|A23S|G|1804
*
8HL4|1|A23S|C|2138
8HL4|1|A23S|G|2139

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L22P

50S ribosomal protein L22

Chain L31E

50S ribosomal protein L31e

Chain L47A

50S ribosomal protein L47A