J4_8HSP_013

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HSP_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0479

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8HSP|1|a|A|1772
8HSP|1|a|A|1773
8HSP|1|a|C|1774
8HSP|1|a|U|1775
8HSP|1|a|G|1776
*
8HSP|1|a|C|1788
8HSP|1|a|A|1789
8HSP|1|a|C|1790
8HSP|1|a|A|1791
8HSP|1|a|G|1792
*
8HSP|1|a|U|1827
8HSP|1|a|G|1828
8HSP|1|a|A|1829
8HSP|1|a|C|1830
*
8HSP|1|a|G|1975
8HSP|1|a|U|1976
8HSP|1|a|A|1977
8HSP|1|a|A|1978
8HSP|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2