3D structure

PDB id
8IFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-bound E.coli 70S ribosome in the PURE system
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8IFC_013 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0395
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8IFC|1|a|A|1772
8IFC|1|a|A|1773
8IFC|1|a|C|1774
8IFC|1|a|U|1775
8IFC|1|a|G|1776
*
8IFC|1|a|C|1788
8IFC|1|a|A|1789
8IFC|1|a|C|1790
8IFC|1|a|A|1791
8IFC|1|a|G|1792
*
8IFC|1|a|U|1827
8IFC|1|a|G|1828
8IFC|1|a|A|1829
8IFC|1|a|C|1830
*
8IFC|1|a|G|1975
8IFC|1|a|U|1976
8IFC|1|a|A|1977
8IFC|1|a|A|1978
8IFC|1|a|U|1979

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0689 s