3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
8INE|1|2|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8INE_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1598
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_94698.1
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Number of instances in this motif group
10

Unit IDs

8INE|1|2|C|111
8INE|1|2|C|112
*
8INE|1|2|G|278
8INE|1|2|A|279
8INE|1|2|G|280
8INE|1|2|U|281
8INE|1|2|C|282
8INE|1|2|G|283
*
8INE|1|2|C|304
8INE|1|2|A|305
8INE|1|2|A|306
8INE|1|2|A|307
8INE|1|2|G|308
8INE|1|2|C|309
8INE|1|2|G|310
*
8INE|1|2|U|327
8INE|1|2|A|328
8INE|1|2|A|329
8INE|1|2|G|330

Current chains

Chain 2
28S rRNA

Nearby chains

Chain H
60S ribosomal protein L35
Chain K
60S ribosomal protein L36
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15

Coloring options:


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