J4_8IP8_001
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGUCG*CAAAUCG*CAAG
- Length
- 19 nucleotides
- Bulged bases
- 8IP8|1|RB|C|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP8_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.185
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|C|111
8IP8|1|RB|C|112
*
8IP8|1|RB|G|265
8IP8|1|RB|A|266
8IP8|1|RB|G|267
8IP8|1|RB|U|268
8IP8|1|RB|C|269
8IP8|1|RB|G|270
*
8IP8|1|RB|C|291
8IP8|1|RB|A|292
8IP8|1|RB|A|293
8IP8|1|RB|A|294
8IP8|1|RB|U|295
8IP8|1|RB|C|296
8IP8|1|RB|G|297
*
8IP8|1|RB|C|314
8IP8|1|RB|A|315
8IP8|1|RB|A|316
8IP8|1|RB|G|317
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein eL36
- Chain BB
- 60S ribosomal protein uL29
- Chain HA
- 60S ribosomal protein eL15
- Chain KB
- 60S ribosomal protein eL13
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