J4_8IP8_004
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUUC*GGUAAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8IP8|1|RB|A|1526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP8_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0774
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|RB|G|1495
8IP8|1|RB|G|1496
8IP8|1|RB|U|1497
8IP8|1|RB|U|1498
8IP8|1|RB|C|1499
*
8IP8|1|RB|G|1523
8IP8|1|RB|G|1524
8IP8|1|RB|U|1525
8IP8|1|RB|A|1526
8IP8|1|RB|A|1527
8IP8|1|RB|G|1528
*
8IP8|1|RB|C|1612
8IP8|1|RB|C|1613
*
8IP8|1|RB|G|1825
8IP8|1|RB|G|1826
8IP8|1|RB|U|1827
8IP8|1|RB|C|1828
8IP8|1|RB|G|1829
8IP8|1|RB|U|1830
8IP8|1|RB|A|1831
8IP8|1|RB|C|1832
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein eL19
- Chain NA
- 60S ribosomal protein uL23
- Chain NB
- 60S ribosomal protein eL38
- Chain PB
- 60S ribosomal protein eL34
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain UA
- 60S ribosomal protein eL37
- Chain VA
- 60S ribosomal protein eL39
Coloring options: