J4_8IP8_006
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP8_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0684
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8IP8|1|RB|G|2124
8IP8|1|RB|A|2125
8IP8|1|RB|C|2126
8IP8|1|RB|U|2127
8IP8|1|RB|G|2128
*
8IP8|1|RB|C|2140
8IP8|1|RB|A|2141
8IP8|1|RB|A|2142
8IP8|1|RB|A|2143
8IP8|1|RB|G|2144
*
8IP8|1|RB|U|2179
8IP8|1|RB|G|2180
8IP8|1|RB|A|2181
8IP8|1|RB|U|2182
8IP8|1|RB|U|2183
*
8IP8|1|RB|A|2310
8IP8|1|RB|U|2311
8IP8|1|RB|U|2312
8IP8|1|RB|A|2313
8IP8|1|RB|A|2314
8IP8|1|RB|C|2315
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain GB
- 60S ribosomal protein eL43
- Chain IB
- 60S ribosomal protein eL41
- Chain aa
- Small subunit ribosomal RNA; SSU rRNA
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