J4_8IP8_012
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8IP8|1|aa|A|627, 8IP8|1|aa|A|1031, 8IP8|1|aa|C|1033, 8IP8|1|aa|A|1035
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP8_012 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0792
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8IP8|1|aa|A|626
8IP8|1|aa|A|627
8IP8|1|aa|G|628
*
8IP8|1|aa|C|980
8IP8|1|aa|G|981
8IP8|1|aa|A|982
8IP8|1|aa|A|983
8IP8|1|aa|A|984
8IP8|1|aa|G|985
*
8IP8|1|aa|C|1026
8IP8|1|aa|C|1027
8IP8|1|aa|A|1028
8IP8|1|aa|U|1029
8IP8|1|aa|A|1030
8IP8|1|aa|A|1031
8IP8|1|aa|A|1032
8IP8|1|aa|C|1033
8IP8|1|aa|G|1034
8IP8|1|aa|A|1035
8IP8|1|aa|U|1036
8IP8|1|aa|G|1037
*
8IP8|1|aa|U|1108
8IP8|1|aa|U|1109
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain GB
- 60S ribosomal protein eL43
- Chain IB
- 60S ribosomal protein eL41
- Chain db
- 40S ribosomal protein eS26
- Chain ga
- 40S ribosomal protein uS12
- Chain ib
- 40S ribosomal protein uS17
- Chain na
- 40S ribosomal protein uS11
- Chain pa
- 40S ribosomal protein uS15
- Chain va
- 40S ribosomal protein uS8
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