J4_8IPX_007
3D structure
- PDB id
- 8IPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUAA*(OMU)C*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 8IPX|1|2|A|4589, 8IPX|1|2|U|4677
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IPX_007 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.1434
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IPX|1|2|G|4587
8IPX|1|2|U|4588
8IPX|1|2|A|4589
8IPX|1|2|A|4590
*
8IPX|1|2|OMU|4620
8IPX|1|2|C|4621
*
8IPX|1|2|G|4676
8IPX|1|2|U|4677
8IPX|1|2|G|4678
*
8IPX|1|2|C|4712
8IPX|1|2|G|4713
8IPX|1|2|C|4714
8IPX|1|2|C|4715
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal protein L13a
- Chain e
- 60S ribosomal protein L23
- Chain z
- Protein LLP homolog
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