J4_8J1Z_008

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8J1Z_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0551

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8J1Z|1|a|A|1772
8J1Z|1|a|A|1773
8J1Z|1|a|C|1774
8J1Z|1|a|U|1775
8J1Z|1|a|G|1776
*
8J1Z|1|a|C|1788
8J1Z|1|a|A|1789
8J1Z|1|a|C|1790
8J1Z|1|a|A|1791
8J1Z|1|a|G|1792
*
8J1Z|1|a|U|1827
8J1Z|1|a|G|1828
8J1Z|1|a|A|1829
8J1Z|1|a|C|1830
*
8J1Z|1|a|G|1975
8J1Z|1|a|U|1976
8J1Z|1|a|A|1977
8J1Z|1|a|A|1978
8J1Z|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2