J4_8JDJ_013
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8JDJ|1|D|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JDJ_013 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2014
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8JDJ|1|D|C|4231
8JDJ|1|D|U|4232
8JDJ|1|D|A|4233
8JDJ|1|D|A|4234
8JDJ|1|D|G|4235
*
8JDJ|1|D|U|4289
8JDJ|1|D|U|4290
8JDJ|1|D|G|4291
8JDJ|1|D|A|4292
8JDJ|1|D|PSU|4293
*
8JDJ|1|D|A|4317
8JDJ|1|D|C|4318
8JDJ|1|D|C|4319
*
8JDJ|1|D|G|4328
8JDJ|1|D|G|4329
8JDJ|1|D|G|4330
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain J
- 60S ribosomal protein L5
- Chain Y
- 60S ribosomal protein L21
- Chain g
- 60S ribosomal protein L29
- Chain t
- 60S ribosomal protein L36a
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