J4_8JDJ_015
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8JDJ|1|w|G|407
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JDJ_015 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2213
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8JDJ|1|w|C|98
8JDJ|1|w|A2M|99
8JDJ|1|w|U|100
8JDJ|1|w|U|101
8JDJ|1|w|A|102
8JDJ|1|w|A|103
8JDJ|1|w|A|104
8JDJ|1|w|PSU|105
8JDJ|1|w|C|106
*
8JDJ|1|w|G|355
8JDJ|1|w|C|356
8JDJ|1|w|C|357
*
8JDJ|1|w|G|405
8JDJ|1|w|PSU|406
8JDJ|1|w|G|407
8JDJ|1|w|A|408
8JDJ|1|w|C|409
*
8JDJ|1|w|G|431
8JDJ|1|w|G|432
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 5
- 40S ribosomal protein S8
- Chain 8
- 40S ribosomal protein S11
- Chain AJ
- 40S ribosomal protein S23
Coloring options: