J4_8JDJ_016
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8JDJ|1|w|A|672, 8JDJ|1|w|A|1083, 8JDJ|1|w|C|1085, 8JDJ|1|w|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JDJ_016 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1233
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8JDJ|1|w|A|671
8JDJ|1|w|A|672
8JDJ|1|w|G|673
*
8JDJ|1|w|C|1032
8JDJ|1|w|G|1033
8JDJ|1|w|A|1034
8JDJ|1|w|A|1035
8JDJ|1|w|A|1036
8JDJ|1|w|G|1037
*
8JDJ|1|w|C|1078
8JDJ|1|w|C|1079
8JDJ|1|w|A|1080
8JDJ|1|w|PSU|1081
8JDJ|1|w|A|1082
8JDJ|1|w|A|1083
8JDJ|1|w|A|1084
8JDJ|1|w|C|1085
8JDJ|1|w|G|1086
8JDJ|1|w|A|1087
8JDJ|1|w|U|1088
8JDJ|1|w|G|1089
*
8JDJ|1|w|U|1160
8JDJ|1|w|U|1161
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 8
- 40S ribosomal protein S11
- Chain 9
- 40S ribosomal protein S13
- Chain AA
- 40S ribosomal protein S14
- Chain AI
- 40S ribosomal protein S15a
- Chain AJ
- 40S ribosomal protein S23
- Chain AM
- 40S ribosomal protein S26
- Chain s
- 60S ribosomal protein L41
- Chain u
- 60S ribosomal protein L37a
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