J4_8JDK_003
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8JDK|1|D|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JDK_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1116
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8JDK|1|D|C|111
8JDK|1|D|C|112
*
8JDK|1|D|G|278
8JDK|1|D|A|279
8JDK|1|D|G|280
8JDK|1|D|U|281
8JDK|1|D|C|282
8JDK|1|D|G|283
*
8JDK|1|D|C|304
8JDK|1|D|A|305
8JDK|1|D|A|306
8JDK|1|D|A|307
8JDK|1|D|G|308
8JDK|1|D|C|309
8JDK|1|D|G|310
*
8JDK|1|D|U|327
8JDK|1|D|A|328
8JDK|1|D|A|329
8JDK|1|D|G|330
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain m
- 60S ribosomal protein L35
- Chain n
- 60S ribosomal protein L36
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