J4_8JSG_001

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8JSG|1|g|A|116, 8JSG|1|g|G|117, 8JSG|1|g|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8JSG_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3517

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8JSG|1|g|G|115
8JSG|1|g|A|116
8JSG|1|g|G|117
8JSG|1|g|U|118
8JSG|1|g|A|119
8JSG|1|g|A|120
8JSG|1|g|U|121
8JSG|1|g|G|122
*
8JSG|1|g|U|239
8JSG|1|g|G|240
*
8JSG|1|g|C|286
8JSG|1|g|U|287
8JSG|1|g|A|288
8JSG|1|g|G|289
*
8JSG|1|g|C|311
8JSG|1|g|C|312

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS17

Chain y

30S ribosomal protein S16