J4_8K2D_005
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8K2D|1|C1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2D|1|C1|U|1495
8K2D|1|C1|C|1496
*
8K2D|1|C1|G|1520
8K2D|1|C1|G|1521
8K2D|1|C1|U|1522
8K2D|1|C1|U|1523
8K2D|1|C1|A|1524
8K2D|1|C1|G|1525
*
8K2D|1|C1|C|1614
8K2D|1|C1|C|1615
*
8K2D|1|C1|G|1829
8K2D|1|C1|G|1830
8K2D|1|C1|U|1831
8K2D|1|C1|C|1832
8K2D|1|C1|G|1833
8K2D|1|C1|U|1834
8K2D|1|C1|A|1835
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lk
- Large ribosomal subunit protein eL38
- Chain Ll
- Large ribosomal subunit protein eL39
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