3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GG*CU*AG*UC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8K2D_006 not in the Motif Atlas
Homologous match to J4_8C3A_005
Geometric discrepancy: 0.0962
The information below is about J4_8C3A_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8K2D|1|C1|G|1674
8K2D|1|C1|G|1675
*
8K2D|1|C1|C|1693
8K2D|1|C1|U|1694
*
8K2D|1|C1|A|1752
8K2D|1|C1|G|1753
*
8K2D|1|C1|U|1772
8K2D|1|C1|C|1773

Current chains

Chain C1
23S rRNA

Nearby chains

Chain LU
Large ribosomal subunit protein eL22A
Chain Lg
Large ribosomal subunit protein eL34A
Chain Lk
Large ribosomal subunit protein eL38

Coloring options:


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