J4_8K2D_009

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

8K2D|1|C1|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2D|1|C1|C|2654
8K2D|1|C1|U|2655
8K2D|1|C1|A|2656
8K2D|1|C1|A|2657
8K2D|1|C1|G|2658
*
8K2D|1|C1|U|2712
8K2D|1|C1|U|2713
8K2D|1|C1|G|2714
*
8K2D|1|C1|C|2741
8K2D|1|C1|C|2742
*
8K2D|1|C1|G|2751
8K2D|1|C1|U|2752
8K2D|1|C1|G|2753

Current chains

Chain C1

23S rRNA

Nearby chains

Chain CS

Suppressor protein STM1

Chain LD

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21A

Chain Lo

Large ribosomal subunit protein eL42A