J4_8OI5_009
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OI5_009 not in the Motif Atlas
- Homologous match to J4_8C3A_009
- Geometric discrepancy: 0.0539
- The information below is about J4_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OI5|1|1|U|2982
8OI5|1|1|A|2983
8OI5|1|1|A|2984
*
8OI5|1|1|U|3014
8OI5|1|1|C|3015
*
8OI5|1|1|G|3070
8OI5|1|1|C|3071
8OI5|1|1|U|3072
*
8OI5|1|1|A|3106
8OI5|1|1|U|3107
8OI5|1|1|G|3108
Current chains
- Chain 1
- 25S
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain k
- 60S ribosomal protein L3
- Chain w
- Ribosomal protein L13
Coloring options: