J4_8OVE_003
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UC*GAGUAG*UCAAGCCG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 8OVE|1|BA|C|365, 8OVE|1|BA|C|366
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OVE_003 not in the Motif Atlas
- Homologous match to J4_8C3A_001
- Geometric discrepancy: 0.2547
- The information below is about J4_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BA|U|116
8OVE|1|BA|C|117
*
8OVE|1|BA|G|334
8OVE|1|BA|A|335
8OVE|1|BA|G|336
8OVE|1|BA|U|337
8OVE|1|BA|A|338
8OVE|1|BA|G|339
*
8OVE|1|BA|U|360
8OVE|1|BA|C|361
8OVE|1|BA|A|362
8OVE|1|BA|A|363
8OVE|1|BA|G|364
8OVE|1|BA|C|365
8OVE|1|BA|C|366
8OVE|1|BA|G|367
*
8OVE|1|BA|C|384
8OVE|1|BA|A|385
8OVE|1|BA|A|386
8OVE|1|BA|G|387
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- 60S ribosomal protein L13
- Chain BQ
- Ribosomal protein L15
- Chain Bk
- 60S ribosomal protein L35, putative
- Chain Bm
- Ribosomal protein L36, putative
Coloring options: