J4_8OVE_005
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAAGAU*AU*ACAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8OVE|1|BA|A|1623, 8OVE|1|BA|G|1626
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OVE_005 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.2216
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34212.2
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|BA|C|1622
8OVE|1|BA|A|1623
8OVE|1|BA|A|1624
8OVE|1|BA|A|1625
8OVE|1|BA|G|1626
8OVE|1|BA|A|1627
8OVE|1|BA|U|1628
*
8OVE|1|BA|A|1663
8OVE|1|BA|U|1664
*
8OVE|1|BB|A|60
8OVE|1|BB|C|61
8OVE|1|BB|A|62
8OVE|1|BB|U|63
*
8OVE|1|BB|A|616
8OVE|1|BB|G|617
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BR
- 60S ribosomal protein L17, putative
- Chain BT
- 60S ribosomal protein L19, putative
- Chain Bh
- 60S ribosomal subunit protein L31, putative
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