J4_8OZ0_002

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAG*CGAAAG*CCA(PSU)AAACGAUG*UU

Length

23 nucleotides

Bulged bases

8OZ0|1|W|A|672, 8OZ0|1|W|A|1083, 8OZ0|1|W|C|1085, 8OZ0|1|W|A|1087

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8OZ0_002 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1458

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

8OZ0|1|W|A|671
8OZ0|1|W|A|672
8OZ0|1|W|G|673
*
8OZ0|1|W|C|1032
8OZ0|1|W|G|1033
8OZ0|1|W|A|1034
8OZ0|1|W|A|1035
8OZ0|1|W|A|1036
8OZ0|1|W|G|1037
*
8OZ0|1|W|C|1078
8OZ0|1|W|C|1079
8OZ0|1|W|A|1080
8OZ0|1|W|PSU|1081
8OZ0|1|W|A|1082
8OZ0|1|W|A|1083
8OZ0|1|W|A|1084
8OZ0|1|W|C|1085
8OZ0|1|W|G|1086
8OZ0|1|W|A|1087
8OZ0|1|W|U|1088
8OZ0|1|W|G|1089
*
8OZ0|1|W|U|1160
8OZ0|1|W|U|1161

Current chains

Chain W

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain J

Eukaryotic translation initiation factor 3 subunit C

Chain R

40S ribosomal protein S26

Chain T

40S ribosomal protein S14

Chain V

40S ribosomal protein S13

Chain X

40S ribosomal protein S11

Chain a

40S ribosomal protein S23

Chain c

40S ribosomal protein S15a