J4_8P03_003
3D structure
- PDB id
- 8P03 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with m6A mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8P03|1|2|A|662, 8P03|1|2|A|1079, 8P03|1|2|C|1081, 8P03|1|2|A|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P03_003 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.089
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8P03|1|2|A|661
8P03|1|2|A|662
8P03|1|2|G|663
*
8P03|1|2|C|1028
8P03|1|2|G|1029
8P03|1|2|A|1030
8P03|1|2|A|1031
8P03|1|2|A|1032
8P03|1|2|G|1033
*
8P03|1|2|C|1074
8P03|1|2|C|1075
8P03|1|2|A|1076
8P03|1|2|U|1077
8P03|1|2|A|1078
8P03|1|2|A|1079
8P03|1|2|A|1080
8P03|1|2|C|1081
8P03|1|2|G|1082
8P03|1|2|A|1083
8P03|1|2|U|1084
8P03|1|2|G|1085
*
8P03|1|2|U|1156
8P03|1|2|U|1157
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain N
- 40S ribosomal protein S11
- Chain P
- ribosomal protein uS15
- Chain Q
- 40S ribosomal protein uS11
- Chain Y
- Ribosomal protein S15a
- Chain Z
- 40S ribosomal protein S23
- Chain b
- 40S ribosomal protein S26
- Chain l
- 60S ribosomal protein L41
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