J4_8P2F_001

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8P2F|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2F_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1065

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8P2F|1|A|C|271
8P2F|1|A|C|272
*
8P2F|1|A|G|416
8P2F|1|A|A|417
8P2F|1|A|G|418
8P2F|1|A|U|419
8P2F|1|A|A|420
8P2F|1|A|C|421
*
8P2F|1|A|G|445
8P2F|1|A|G|446
8P2F|1|A|A|447
8P2F|1|A|A|448
8P2F|1|A|U|449
8P2F|1|A|C|450
8P2F|1|A|U|451
8P2F|1|A|G|452
*
8P2F|1|A|U|467
8P2F|1|A|A|468
8P2F|1|A|A|469
8P2F|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28