J4_8P2H_008

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P2H_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0468

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8P2H|1|A|G|1799
8P2H|1|A|A|1800
8P2H|1|A|C|1801
8P2H|1|A|U|1802
8P2H|1|A|G|1803
*
8P2H|1|A|C|1815
8P2H|1|A|A|1816
8P2H|1|A|C|1817
8P2H|1|A|A|1818
8P2H|1|A|G|1819
*
8P2H|1|A|U|1854
8P2H|1|A|G|1855
8P2H|1|A|A|1856
8P2H|1|A|C|1857
*
8P2H|1|A|G|2002
8P2H|1|A|U|2003
8P2H|1|A|A|2004
8P2H|1|A|A|2005
8P2H|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2