3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
8P4V|1|1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8P4V_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.083
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

8P4V|1|1|U|112
8P4V|1|1|C|113
*
8P4V|1|1|G|267
8P4V|1|1|A|268
8P4V|1|1|G|269
8P4V|1|1|U|270
8P4V|1|1|C|271
8P4V|1|1|G|272
*
8P4V|1|1|C|293
8P4V|1|1|U|294
8P4V|1|1|A|295
8P4V|1|1|A|296
8P4V|1|1|G|297
8P4V|1|1|U|298
8P4V|1|1|G|299
*
8P4V|1|1|U|316
8P4V|1|1|A|317
8P4V|1|1|A|318
8P4V|1|1|A|319

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AI
60S ribosomal protein L35-A
Chain AJ
60S ribosomal protein L36-A
Chain t
60S ribosomal protein L13-A
Chain v
60S ribosomal protein L15-A

Coloring options:


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