J4_8P4V_019

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P4V_019 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.0531

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8P4V|1|AR|C|2192
8P4V|1|AR|U|2193
8P4V|1|AR|G|2194
*
8P4V|1|AR|C|2248
8P4V|1|AR|G|2249
*
8P4V|1|AR|C|2267
8P4V|1|AR|U|2268
8P4V|1|AR|U|2269
8P4V|1|AR|A|2270
8P4V|1|AR|A|2271
8P4V|1|AR|G|2272
8P4V|1|AR|G|2273
8P4V|1|AR|U|2274
8P4V|1|AR|A|2275
8P4V|1|AR|G|2276
*
8P4V|1|AR|U|2310
8P4V|1|AR|G|2311
8P4V|1|AR|A|2312
8P4V|1|AR|A|2313
8P4V|1|AR|U|2314
8P4V|1|AR|G|2315

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DP

60S ribosomal protein L41-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA