J4_8P9A_011

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

8P9A|1|A|A|623, 8P9A|1|A|A|1026, 8P9A|1|A|U|1029, 8P9A|1|A|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P9A_011 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.0426

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|A|A|622
8P9A|1|A|A|623
8P9A|1|A|G|624
*
8P9A|1|A|C|975
8P9A|1|A|G|976
8P9A|1|A|A|977
8P9A|1|A|A|978
8P9A|1|A|A|979
8P9A|1|A|G|980
*
8P9A|1|A|C|1021
8P9A|1|A|C|1022
8P9A|1|A|A|1023
8P9A|1|A|U|1024
8P9A|1|A|A|1025
8P9A|1|A|A|1026
8P9A|1|A|A|1027
8P9A|1|A|C|1028
8P9A|1|A|U|1029
8P9A|1|A|A|1030
8P9A|1|A|U|1031
8P9A|1|A|G|1032
*
8P9A|1|A|U|1103
8P9A|1|A|U|1104

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

Large ribosomal subunit protein eL41B

Chain M

40S ribosomal protein S11-A

Chain O

40S ribosomal protein S13

Chain P

40S ribosomal protein S14-B

Chain X

40S ribosomal protein S22-A

Chain Y

40S ribosomal protein S23-A

Chain b

Small ribosomal subunit protein eS26B