J4_8PFR_001
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8PFR|1|A|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PFR_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0979
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.2
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8PFR|1|A|U|112
8PFR|1|A|C|113
*
8PFR|1|A|G|267
8PFR|1|A|A|268
8PFR|1|A|G|269
8PFR|1|A|U|270
8PFR|1|A|C|271
8PFR|1|A|G|272
*
8PFR|1|A|C|293
8PFR|1|A|U|294
8PFR|1|A|A|295
8PFR|1|A|A|296
8PFR|1|A|G|297
8PFR|1|A|U|298
8PFR|1|A|G|299
*
8PFR|1|A|U|316
8PFR|1|A|A|317
8PFR|1|A|A|318
8PFR|1|A|A|319
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain JV
- 60S ribosomal protein L15-A
- Chain RH
- 60S ribosomal protein L35-A
- Chain RI
- 60S ribosomal protein L36-A
Coloring options: