J4_8PHJ_013

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PHJ_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.058

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8PHJ|1|a|A|1772
8PHJ|1|a|A|1773
8PHJ|1|a|C|1774
8PHJ|1|a|U|1775
8PHJ|1|a|G|1776
*
8PHJ|1|a|C|1788
8PHJ|1|a|A|1789
8PHJ|1|a|C|1790
8PHJ|1|a|A|1791
8PHJ|1|a|G|1792
*
8PHJ|1|a|U|1827
8PHJ|1|a|G|1828
8PHJ|1|a|A|1829
8PHJ|1|a|C|1830
*
8PHJ|1|a|G|1975
8PHJ|1|a|U|1976
8PHJ|1|a|A|1977
8PHJ|1|a|A|1978
8PHJ|1|a|U|1979

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain c

Large ribosomal subunit protein uL2