J4_8PKL_001

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8PKL|1|7|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1355

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8PKL|1|7|C|268
8PKL|1|7|C|269
*
8PKL|1|7|G|370
8PKL|1|7|A|371
8PKL|1|7|G|372
8PKL|1|7|U|373
8PKL|1|7|A|374
8PKL|1|7|G|375
*
8PKL|1|7|U|399
8PKL|1|7|G|400
8PKL|1|7|A|401
8PKL|1|7|A|402
8PKL|1|7|U|403
8PKL|1|7|A|404
8PKL|1|7|U|405
8PKL|1|7|G|406
*
8PKL|1|7|C|421
8PKL|1|7|A|422
8PKL|1|7|A|423
8PKL|1|7|G|424

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain i

50S ribosomal protein L9