J4_8PKL_004

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8PKL|1|7|G|1271, 8PKL|1|7|A|1272, 8PKL|1|7|U|1273, 8PKL|1|7|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0835

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8PKL|1|7|C|1270
8PKL|1|7|G|1271
8PKL|1|7|A|1272
8PKL|1|7|U|1273
8PKL|1|7|A|1274
8PKL|1|7|A|1275
8PKL|1|7|A|1276
*
8PKL|1|7|U|1294
8PKL|1|7|C|1295
*
8PKL|1|7|G|1645
8PKL|1|7|C|1646
8PKL|1|7|U|1647
8PKL|1|7|U|1648
*
8PKL|1|7|A|2009
8PKL|1|7|G|2010

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain q

50S ribosomal protein L17

Chain v

50S ribosomal protein L22