J4_8PKL_018

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8PKL|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_018 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3081

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8PKL|1|A|G|115
8PKL|1|A|A|116
8PKL|1|A|G|117
8PKL|1|A|U|118
8PKL|1|A|A|119
8PKL|1|A|A|120
8PKL|1|A|U|121
8PKL|1|A|G|122
*
8PKL|1|A|U|239
8PKL|1|A|G|240
*
8PKL|1|A|C|286
8PKL|1|A|U|287
8PKL|1|A|A|288
8PKL|1|A|G|289
*
8PKL|1|A|C|311
8PKL|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17