J4_8PNN_011
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8PNN|1|A|A|623, 8PNN|1|A|A|1026, 8PNN|1|A|U|1029, 8PNN|1|A|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PNN_011 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0519
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8PNN|1|A|A|622
8PNN|1|A|A|623
8PNN|1|A|G|624
*
8PNN|1|A|C|975
8PNN|1|A|G|976
8PNN|1|A|A|977
8PNN|1|A|A|978
8PNN|1|A|A|979
8PNN|1|A|G|980
*
8PNN|1|A|C|1021
8PNN|1|A|C|1022
8PNN|1|A|A|1023
8PNN|1|A|U|1024
8PNN|1|A|A|1025
8PNN|1|A|A|1026
8PNN|1|A|A|1027
8PNN|1|A|C|1028
8PNN|1|A|U|1029
8PNN|1|A|A|1030
8PNN|1|A|U|1031
8PNN|1|A|G|1032
*
8PNN|1|A|U|1103
8PNN|1|A|U|1104
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- Large ribosomal subunit protein eL41B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain M
- 40S ribosomal protein S11-A
- Chain O
- 40S ribosomal protein S13
- Chain P
- 40S ribosomal protein S14-B
- Chain X
- 40S ribosomal protein S22-A
- Chain Y
- 40S ribosomal protein S23-A
- Chain b
- Small ribosomal subunit protein eS26B
Coloring options: