J4_8PPL_001

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

8PPL|1|A2|G|407

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PPL_001 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.1968

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.2

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

3

Unit IDs

8PPL|1|A2|C|98
8PPL|1|A2|A2M|99
8PPL|1|A2|U|100
8PPL|1|A2|U|101
8PPL|1|A2|A|102
8PPL|1|A2|A|103
8PPL|1|A2|A|104
8PPL|1|A2|PSU|105
8PPL|1|A2|C|106
*
8PPL|1|A2|G|355
8PPL|1|A2|C|356
8PPL|1|A2|C|357
*
8PPL|1|A2|G|405
8PPL|1|A2|PSU|406
8PPL|1|A2|G|407
8PPL|1|A2|A|408
8PPL|1|A2|C|409
*
8PPL|1|A2|G|431
8PPL|1|A2|G|432

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11

Chain AX

40S ribosomal protein S23