J4_8QBT_010

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QBT_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0384

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8QBT|1|A|A|1772
8QBT|1|A|A|1773
8QBT|1|A|C|1774
8QBT|1|A|U|1775
8QBT|1|A|G|1776
*
8QBT|1|A|C|1788
8QBT|1|A|A|1789
8QBT|1|A|C|1790
8QBT|1|A|A|1791
8QBT|1|A|G|1792
*
8QBT|1|A|U|1827
8QBT|1|A|G|1828
8QBT|1|A|A|1829
8QBT|1|A|C|1830
*
8QBT|1|A|G|1975
8QBT|1|A|U|1976
8QBT|1|A|A|1977
8QBT|1|A|A|1978
8QBT|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2