J4_8QCQ_001

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8QCQ|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QCQ_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1725

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8QCQ|1|A|C|271
8QCQ|1|A|C|272
*
8QCQ|1|A|G|417
8QCQ|1|A|A|418
8QCQ|1|A|G|419
8QCQ|1|A|U|420
8QCQ|1|A|A|421
8QCQ|1|A|C|422
*
8QCQ|1|A|G|446
8QCQ|1|A|G|447
8QCQ|1|A|A|448
8QCQ|1|A|A|449
8QCQ|1|A|U|450
8QCQ|1|A|C|451
8QCQ|1|A|C|452
8QCQ|1|A|G|453
*
8QCQ|1|A|C|468
8QCQ|1|A|A|469
8QCQ|1|A|A|470
8QCQ|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28