J4_8QCQ_006

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8QCQ|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QCQ_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0796

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8QCQ|1|A|U|1352
8QCQ|1|A|C|1353
*
8QCQ|1|A|G|1377
8QCQ|1|A|G|1378
8QCQ|1|A|U|1379
8QCQ|1|A|U|1380
8QCQ|1|A|A|1381
8QCQ|1|A|G|1382
*
8QCQ|1|A|C|1443
8QCQ|1|A|C|1444
*
8QCQ|1|A|G|1642
8QCQ|1|A|C|1643
8QCQ|1|A|C|1644
8QCQ|1|A|C|1645
8QCQ|1|A|G|1646
8QCQ|1|A|U|1647
8QCQ|1|A|A|1648

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23